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Move host skill root resolution into the skills extension (#36943)
## What changed - Move config-layer, user, system, plugin, extra, and repository skill-root resolution from `core-skills` into the host skills extension. - Keep the core loader focused on loading explicit `SkillRoot` values. - Relocate and expand tests for root precedence, deduplication, repository ancestry, plugin metadata, and concurrent probing. GitOrigin-RevId: 3b95cf28101b8b4d64d54079d202154dad560aab
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