Summary
- remove the extra transaction guard that checked for existing dynamic
tools per thread before inserting new ones
- insert each tool record with `ON CONFLICT(thread_id, position) DO
NOTHING` to ignore duplicates instead of pre-querying
- simplify execution to use the shared pool directly and avoid unneeded
commits
Testing
- Not run (not requested)
Persist thread_dynamic_tools in sqlite and read first from it. Fall back
to rollout files if it's not found. Persist dynamic tools to both sqlite
and rollout files.
Saw that new sessions get populated to db correctly & old sessions get
backfilled correctly at startup:
```
celia@com-92114 codex-rs % sqlite3 ~/.codex/state.sqlite \ "select thread_id, position,name,description,input_schema from thread_dynamic_tools;"
019c0cad-ec0d-74b2-a787-e8b33a349117|0|geo_lookup|lookup a city|{"properties":{"city":{"type":"string"}},"required":["city"],"type":"object"}
....
019c10ca-aa4b-7620-ae40-c0919fbd7ea7|0|geo_lookup|lookup a city|{"properties":{"city":{"type":"string"}},"required":["city"],"type":"object"}
```
Add a `.sqlite` database to be used to store rollout metatdata (and
later logs)
This PR is phase 1:
* Add the database and the required infrastructure
* Add a backfill of the database
* Persist the newly created rollout both in files and in the DB
* When we need to get metadata or a rollout, consider the `JSONL` as the
source of truth but compare the results with the DB and show any errors
jif-oai