## Why
Incomplete retained checkpoints can omit root user instructions that still survive in live history. Queued input can also reach model history after a later-accepted answer, so recording order cannot reliably order grants and restrictions for subagent authorization reviews.
## What changed
- Reconcile retained evidence with surviving local user messages using source identity and persisted acceptance order, including answers present only in the checkpoint.
- Preserve checkpoint gaps and mark evidence incomplete when recovered instructions lack an order or conflict with an existing order.
- Restore the input-order counter from surviving local metadata so new instructions sort after recovered evidence, even without a retained checkpoint.
## Testing
Add unit coverage for source matching, acceptance ordering, persistent gaps, conflicting orders, and counter restoration. Extend subagent authorization tests to cover checkpoint resume, queued approvals, missing sources, and a subsequent revocation.
GitOrigin-RevId: 8bfbfd2c797d725796187e5cecf7f3f11a5f3380
felixxia-oai
aa12ab45df